EHR-based Phenotyping Project
Neuroimage-based Phenotyping Project
Epigenome-based Phenotyping Project
Transcriptome-based Phenotyping Project
Phenotype Models for Breast Cancer Screening Project
Stochastic Modeling Lab
Low-dimensional Representations Lab
Data Management Lab
Value of Information Lab
Software Engineering and High-Throughput Computing Core
Bioethics Core
Recent CPCP Publications
Pharmacovigilance via baseline regularization with large-scale longitudinal observational data. Kuang Z, Peissig P, Santos Costa V, Maclin R, Page D. Proceedings of the 23rd ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2017
A review of active learning approaches to experimental design for uncovering biological networks. Sverchkov Y, Craven M. PLoS Computational Biology, 2017
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. Bernstein M, Doan A, Dewey C. Bioinformatics, 2017
Falcon: Scaling up hands-off crowdsourced entity matching to build cloud services. Das S, Suganthan P, Doan A, Naughton J, Krishnan G, Deep R, Arcaute E, Raghavendra V, Park Y. Proceedings of the ACM International Conference on Management of Data (SIGMOD), 2017
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. Roy S, Sridharan R. Genome Research, 2017
SCnorm: robust normalization of single-cell RNA-seq data. Bacher R, Chu LF, Leng N, Gasch A, Thomson J, Stewart R, Newton M, Kendziorski C. Nature Methods, 2017
Screening breast MRI outcomes in routine clinical practice: comparison to BI-RADS benchmarks. Strigel RM, Rollenhagen J, Burnside ES, Elezaby M, Fowler AM, Kelcz F, Salkowski L, DeMartini WB. Academic Radiology 24(4):411-417, 2017
Towards interactive debugging of rule-based entity matching. Panahi F, Wu W, Doan A, Naughton J. Proceedings of the International Conference on Extending Database Technology (EDBT), 2017
Ava: From data to insights through conversation. John RJL, Potti N, Patel J. Proceedings of the Conference on Innovative Data Systems Research (CIDR), 2017