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Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084

atSNP Search

atSNP Search is a web tool that evaluates the impact of single nucleotide polymorphisms (SNPs) on transcription factor binding (TF) in silico. It statistically quantifies whether any given SNP from the dbSNP Build 144 is likely to lead to gain and/or loss of function for binding of any TF from existing TF binding profile databases.

Screening rule for L1-regularized Ising model estimation

An empirical Bayes test for allelic imbalance detection in ChIP-seq

RKColocal

RKColocal provides baisc functions for dual-channel image input/output and colocalization analysis. RKColocal includes tools to display joint distribution of pixel intensities for colocalization analysis, evaluate the average degree of colocalization in a given region, qunatify the degree of colocalization at each pixel and identify colocalized region.

CPCP Seminar: Project Fairsquare Seminar Video

Talk by Aws Albarghouthi PhD, University of Wisconsin Department of Computer Sciences

CPCP Seminar: Friends Don't Let Friends Use Black-Box Models: The Importance of Intelligibility in Machine Learning for Healthcare Seminar Video

Talk by Rich Caruana PhD, Microsoft Research

A geometric framework for statistical analysis of trajectories with distinct temporal spans

Incoherent tensor norms and their applications in higher order tensor completion

Global testing against sparse alternatives under Ising models

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